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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1812
ChIP-seq
1397
total RNA-seq
489
ATAC-seq
360
single cell RNA-seq
208
DNase-seq
84
snATAC-seq
75
WGBS
48
pCHi-C
29
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
94
DNA methylation
Date released
41
May, 2022
25
July, 2019
15
August, 2017
7
November, 2018
6
February, 2021
1
October, 2022
Available data
41
zippedFastqFolder
34
bed bedMethyl
34
bigBed bedMethyl
21
fastq
18
bam
17
bigWig
6
tsv
1
txt
Organism
94
Homo sapiens
Biosample type
55
primary cell
38
tissue
2
cell line
Organ
53
pancreas
52
epithelium
9
heart
7
liver
6
adipose tissue
6
connective tissue
6
musculature of body
3
kidney
3
vasculature
2
blood vessel
2
brain
2
spleen
1
eye
1
limb
1
pericardium
Project
48
AMP
47
HPAP
Genome assembly (visualization)
17
GRCh38
17
hg19
Lab
48
AMP-T2D consortium
47
Klaus Kaestner, Upenn
Audit category:
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BIOSAMPLE
ASSAY
95 results
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WGBS
RRBS
MPRA
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac muscle cell
1
choroid plexus epithelial cell
1
hepatocyte
1
+ See 5 more…
tissue
heart left ventricle
4
1
liver
3
1
skeletal muscle tissue
4
adipose tissue
3
pancreas
2
1
+ See 13 more…
cell line
HepG2
1
MIN6
1
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