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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1653
ChIP-seq
367
ATAC-seq
204
DNase-seq
158
single cell RNA-seq
141
total RNA-seq
85
RNA microarray
73
snATAC-seq
26
pCHi-C
25
Hi-C
24
WGBS
19
RRBS
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
0
snDrop-seq
Assay category
19
DNA methylation
Date released
13
July, 2019
6
August, 2017
1
October, 2022
Available data
17
bed bedMethyl
17
bigBed bedMethyl
4
fastq
tsv
1
txt
Organism
19
Homo sapiens
Biosample type
10
primary cell
9
tissue
1
cell line
Organ
6
epithelium
5
musculature of body
4
kidney
2
brain
2
heart
2
liver
pancreas
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
20
AMP
Genome assembly (visualization)
17
hg19
Lab
20
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
tsv
organ_slims!
pancreas
BIOSAMPLE
ASSAY
20 results
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RRBS
MPRA
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
tissue
skeletal muscle tissue
4
brain
1
heart left ventricle
1
kidney
1
liver
1
+ See 1 more…
cell line
MIN6
1
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