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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
141
single cell RNA-seq
88
ChIP-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
16
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
0
MPRA
Assay category
76
DNA accessibility
Date released
27
February, 2021
21
May, 2022
16
January, 2021
16
May, 2021
10
April, 2020
2
February, 2023
Available data
27
fastq
21
zippedFastqFolder
Organism
91
Homo sapiens
Biosample type
72
primary cell
20
tissue
Organ
10
lung
10
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
thymus
Project
AMP
48
HPAP
34
T1D
10
LungMap
Lab
48
Klaus Kaestner, Upenn
34
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
Audit category:
27
audit script error
1
inconsistent ontology term
award.project!
AMP
organ_slims!
thymus
BIOSAMPLE
ASSAY
92 results
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snATAC-seq
pCHi-C
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
+ See 12 more…
tissue
lung
10
islet of Langerhans
6
pancreas
4
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