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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
517
ATAC-seq
212
DNase-seq
212
total RNA-seq
158
single cell RNA-seq
85
RNA microarray
84
snATAC-seq
69
WGBS
34
Hi-C
26
pCHi-C
21
RRBS
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Target of assay
5
control
5
nucleotide modification
Date released
84
February, 2021
10
November, 2020
1
August, 2021
Available data
84
txt
tsv
Organism
94
Homo sapiens
Biosample type
89
tissue
6
cell line
Organ
84
bone element
10
pancreas
6
epithelium
1
adipose tissue
1
connective tissue
Project
95
AMP
Lab
85
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
90
inconsistent ontology term
assay_title!
DNAme array
files.file_type!
tsv
BIOSAMPLE
ASSAY
95 results
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RNA microarray
MeRIP-seq
tissue
bone element
84
islet of Langerhans
4
subcutaneous adipose tissue
1
cell line
EndoC_BH1
6
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