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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1801
ChIP-seq
1527
total RNA-seq
531
ATAC-seq
368
single cell RNA-seq
203
DNase-seq
87
RNA microarray
84
snATAC-seq
68
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Target of assay
5
control
5
nucleotide modification
Date released
84
February, 2021
10
November, 2020
6
August, 2021
2
December, 2019
Available data
84
txt
2
tsv
Organism
101
Homo sapiens
Biosample type
91
tissue
11
cell line
Organ
84
bone element
10
pancreas
7
epithelium
4
kidney
2
liver
1
adipose tissue
1
connective tissue
Project
102
AMP
Lab
87
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
5
Bing Ren, UCSD
Audit category:
91
inconsistent ontology term
2
audit script error
assay_title!
CRISPRi RNA-seq
month_released!
November, 2018
BIOSAMPLE
ASSAY
102 results
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RNA microarray
MeRIP-seq
STARR-seq
tissue
bone element
84
islet of Langerhans
4
kidney interstitium
1
renal glomerulus
1
subcutaneous adipose tissue
1
cell line
EndoC_BH1
6
HEK293T
2
HepG2
2
Synthesized DNA
1
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