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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1468
total RNA-seq
528
ATAC-seq
356
single cell RNA-seq
212
DNase-seq
83
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
18
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
18
July, 2019
10
November, 2020
2
December, 2019
1
August, 2021
Available data
txt
20
tsv
18
bam
18
bigWig
Organism
30
Homo sapiens
Biosample type
23
tissue
6
cell line
2
primary cell
Organ
12
pancreas
7
epithelium
4
adipose tissue
4
brain
4
connective tissue
3
kidney
3
liver
2
musculature of body
1
heart
Project
31
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
Lab
21
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
2
audit script error
assay_title!
STARR-seq
files.file_type!
txt
BIOSAMPLE
ASSAY
31 results
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small RNA-seq
MeRIP-seq
RNA microarray
tissue
islet of Langerhans
4
body of pancreas
2
right lobe of liver
2
subcutaneous adipose tissue
1
1
cerebellum (Hemisphere)
1
+ See 12 more…
cell line
EndoC_BH1
6
primary cell
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
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