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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1819
ChIP-seq
1467
total RNA-seq
456
ATAC-seq
305
single cell RNA-seq
131
DNase-seq
85
RNA microarray
78
snATAC-seq
75
WGBS
55
pCHi-C
33
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
17
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
84
February, 2021
17
July, 2019
10
November, 2020
1
August, 2021
Available data
84
txt
17
bam
17
bigWig
17
tsv
Organism
111
Homo sapiens
Biosample type
104
tissue
6
cell line
2
primary cell
Organ
84
bone element
12
pancreas
7
epithelium
4
adipose tissue
4
brain
4
connective tissue
kidney
3
liver
2
musculature of body
1
heart
Project
112
AMP
Genome assembly (visualization)
17
GRCh38
17
hg19
Lab
102
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
90
inconsistent ontology term
assay_title!
STARR-seq
organ_slims!
kidney
BIOSAMPLE
ASSAY
112 results
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RNA microarray
small RNA-seq
MeRIP-seq
tissue
bone element
84
islet of Langerhans
4
body of pancreas
2
right lobe of liver
2
subcutaneous adipose tissue
1
1
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cell line
EndoC_BH1
6
primary cell
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
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