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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
335
total RNA-seq
214
ChIP-seq
92
ATAC-seq
80
single cell RNA-seq
10
MeRIP-seq
8
DNase-seq
6
Hi-C
4
WGBS
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
1
snATAC-seq
Assay category
6
DNA methylation
2
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
10
November, 2020
4
July, 2019
4
November, 2018
Available data
6
bam
6
bed bedMethyl
6
bigBed bedMethyl
6
bigWig
4
fastq
2
tsv
Organism
18
Homo sapiens
Biosample type
12
tissue
6
cell line
Organ
18
pancreas
12
epithelium
11
heart
10
connective tissue
10
liver
9
adipose tissue
8
musculature of body
6
brain
5
kidney
3
vasculature
2
blood vessel
2
spleen
1
eye
1
limb
1
pericardium
Project
47
HPAP
18
AMP
Genome assembly (visualization)
6
GRCh38
4
hg19
Lab
10
Rohit N. Kulkarni, M.D., Ph.D.
8
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
BIOSAMPLE
ASSAY
18 results
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MeRIP-seq
WGBS
RRBS
small RNA-seq
tissue
islet of Langerhans
4
1
body of pancreas
2
2
pancreas
2
1
cell line
EndoC_BH1
6
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