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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1653
ChIP-seq
1510
total RNA-seq
527
ATAC-seq
366
single cell RNA-seq
180
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
55
pCHi-C
31
Hi-C
19
RRBS
14
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
19
DNA methylation
1
DNA sequencing
1
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
13
July, 2019
10
November, 2020
6
August, 2017
1
August, 2021
1
March, 2023
Available data
17
bed bedMethyl
17
bigBed bedMethyl
4
fastq
1
vcf
Organism
30
Homo sapiens
Biosample type
14
tissue
9
primary cell
8
cell line
Organ
12
epithelium
12
pancreas
5
musculature of body
4
kidney
3
liver
brain
2
heart
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
30
AMP
1
community
Genome assembly (visualization)
17
hg19
Lab
19
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
1
Anna Gloyn, Oxford
1
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
organ_slims!
brain
BIOSAMPLE
ASSAY
31 results
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RRBS
MeRIP-seq
shRNA RNA-seq
whole genome sequencing assay
tissue
islet of Langerhans
1
4
skeletal muscle tissue
4
heart left ventricle
1
kidney
1
liver
1
+ See 2 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
kidney epithelial cell
1
+ See 4 more…
cell line
EndoC_BH1
6
EndoC-BH1
1
HepG2
1
See all biosamples
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