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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1290
total RNA-seq
1014
ChIP-seq
470
ATAC-seq
235
single cell RNA-seq
200
DNase-seq
RNA microarray
58
WGBS
57
snATAC-seq
56
pCHi-C
33
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
17
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
15
July, 2019
10
November, 2020
3
February, 2021
2
August, 2017
Available data
19
bed bedMethyl
19
bigBed bedMethyl
fastq
3
tsv
Organism
30
Homo sapiens
Biosample type
15
tissue
9
primary cell
6
cell line
Organ
12
epithelium
12
pancreas
7
kidney
3
musculature of body
2
brain
2
heart
1
connective tissue
1
eye
1
liver
1
pericardium
1
vasculature
Project
30
AMP
Genome assembly (visualization)
15
hg19
Lab
20
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
8
inconsistent ontology term
assay_title!
RNA microarray
files.file_type!
fastq
BIOSAMPLE
ASSAY
30 results
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RRBS
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
1
4
skeletal muscle tissue
2
brain
1
heart left ventricle
1
kidney
1
+ See 5 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 4 more…
cell line
EndoC_BH1
6
See all biosamples
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