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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1736
ChIP-seq
1129
total RNA-seq
520
ATAC-seq
369
single cell RNA-seq
210
DNase-seq
86
RNA microarray
84
snATAC-seq
69
WGBS
55
pCHi-C
34
Hi-C
21
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
21
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
15
July, 2019
10
November, 2020
6
August, 2017
Available data
19
bed bedMethyl
19
bigBed bedMethyl
4
fastq
Organism
31
Homo sapiens
Biosample type
15
tissue
10
primary cell
6
cell line
Organ
12
epithelium
12
pancreas
5
musculature of body
4
kidney
2
brain
2
heart
2
liver
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
31
AMP
Genome assembly (visualization)
19
hg19
Lab
21
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
8
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
month_released!
September, 2017
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
31 results
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RRBS
MeRIP-seq
tissue
islet of Langerhans
1
4
skeletal muscle tissue
4
brain
1
heart left ventricle
1
kidney
1
+ See 3 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
cell line
EndoC_BH1
6
See all biosamples
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