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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1405
total RNA-seq
533
ChIP-seq
305
single cell RNA-seq
238
ATAC-seq
78
snATAC-seq
75
WGBS
54
pCHi-C
33
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
DNase-seq
1
MPRA
1
RNA microarray
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
17
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
11
July, 2019
10
November, 2020
6
August, 2017
Available data
15
bed bedMethyl
15
bigBed bedMethyl
4
fastq
Organism
27
Homo sapiens
Biosample type
14
tissue
7
primary cell
6
cell line
Organ
12
epithelium
12
pancreas
5
musculature of body
kidney
2
brain
2
heart
2
liver
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
27
AMP
Genome assembly (visualization)
15
hg19
Lab
17
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
7
inconsistent ontology term
files.file_type!
bed narrowPeak
organ_slims!
bone element
kidney
BIOSAMPLE
ASSAY
27 results
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RRBS
MeRIP-seq
tissue
islet of Langerhans
1
4
skeletal muscle tissue
4
brain
1
heart left ventricle
1
liver
1
+ See 2 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
hepatocyte
1
retinal pigment epithelial cell
1
+ See 2 more…
cell line
EndoC_BH1
6
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