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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1719
ChIP-seq
1447
total RNA-seq
454
ATAC-seq
261
single cell RNA-seq
170
DNase-seq
86
RNA microarray
77
snATAC-seq
67
WGBS
56
pCHi-C
25
Hi-C
16
RRBS
16
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
0
STARR-seq
Assay category
261
Transcription
Target of assay
8
control
5
nucleotide modification
Date released
August, 2021
49
April, 2018
48
July, 2018
47
September, 2023
40
September, 2020
33
May, 2022
18
February, 2021
10
November, 2020
9
April, 2020
3
August, 2018
3
December, 2019
3
July, 2019
3
June, 2018
3
May, 2023
1
February, 2023
November, 2018
1
September, 2018
Available data
133
fastq
113
tsv
106
bam
106
bigWig
52
zippedFastqFolder
7
csv
5
txt
Organism
271
Homo sapiens
Biosample type
186
primary cell
77
tissue
6
cell line
2
in vitro differentiated cells
Organ
90
pancreas
76
epithelium
56
kidney
9
lung
4
connective tissue
3
brain
1
heart
1
liver
musculature of body
Project
130
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
106
GRCh38
106
hg19
Lab
117
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
3
Katalin Susztak, Upenn
Audit category:
15
inconsistent ontology term
7
audit script error
month_released!
August, 2021
November, 2018
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
271 results
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single cell RNA-seq
MeRIP-seq
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 14 more…
tissue
kidney
56
islet of Langerhans
6
4
lung
9
heart
1
liver
1
cell line
EndoC_BH1
6
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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