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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
935
ChIP-seq
442
total RNA-seq
263
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
48
WGBS
32
pCHi-C
28
DNase-seq
14
Hi-C
9
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Target of assay
3
control
3
nucleotide modification
Date released
6
November, 2020
5
August, 2021
Organism
11
Homo sapiens
Biosample type
11
cell line
tissue
Organ
6
epithelium
6
pancreas
2
kidney
2
liver
Project
11
AMP
Lab
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
biosample_type!
tissue
organ_slims!
vasculature
BIOSAMPLE
ASSAY
11 results
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MeRIP-seq
STARR-seq
cell line
EndoC_BH1
6
HEK293T
2
HepG2
2
Synthesized DNA
1