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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1272
ChIP-seq
787
total RNA-seq
486
ATAC-seq
350
single cell RNA-seq
173
DNase-seq
63
WGBS
56
snATAC-seq
52
pCHi-C
24
Hi-C
RRBS
13
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
63
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
10
July, 2019
10
November, 2020
6
August, 2017
February, 2021
6
November, 2018
Available data
41
zippedFastqFolder
16
bam
15
bed bedMethyl
15
bigBed bedMethyl
15
bigWig
9
fastq
Organism
73
Homo sapiens
Biosample type
41
primary cell
26
tissue
6
cell line
Organ
55
pancreas
47
epithelium
8
heart
6
adipose tissue
6
connective tissue
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
musculature of body
Project
41
HPAP
32
AMP
Genome assembly (visualization)
15
GRCh38
Lab
41
Klaus Kaestner, Upenn
22
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
assay_title!
RRBS
month_released!
February, 2021
organ_slims!
liver
musculature of body
BIOSAMPLE
ASSAY
73 results
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WGBS
MeRIP-seq
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
heart left ventricle
4
islet of Langerhans
4
adipose tissue
3
subcutaneous abdominal adipose tissue
3
aorta
2
+ See 6 more…
cell line
EndoC_BH1
6
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