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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1546
ChIP-seq
1256
total RNA-seq
209
DNase-seq
161
ATAC-seq
106
single cell RNA-seq
18
WGBS
18
small RNA-seq
5
FAIRE-seq
1
pCHi-C
0
MeRIP-seq
Assay category
106
Transcription
18
DNA methylation
Target of assay
3
control
Date released
49
April, 2018
48
July, 2018
12
July, 2019
7
November, 2018
3
August, 2018
3
June, 2018
2
August, 2017
1
February, 2021
Available data
248
tsv
151
fastq
125
bam
123
bigWig
93
zippedFastqFolder
17
bed bedMethyl
17
bigBed bedMethyl
13
txt
7
csv
3
bedpe bed3+
2
bed bed3+
2
ibed
Organism
125
Homo sapiens
Biosample type
101
primary cell
23
tissue
1
cell line
Organ
84
pancreas
70
epithelium
7
connective tissue
6
heart
3
brain
2
adipose tissue
2
blood vessel
2
spleen
2
vasculature
1
limb
1
liver
1
musculature of body
Project
125
AMP
Genome assembly (visualization)
123
GRCh38
107
hg19
Lab
125
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
month_released!
September, 2018
BIOSAMPLE
ASSAY
125 results
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single cell RNA-seq
WGBS
pCHi-C
primary cell
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
pancreatic ductal cell
10
+ See 14 more…
tissue
islet of Langerhans
6
adipose tissue
2
aorta
2
body of pancreas
2
heart left ventricle
2
+ See 6 more…
cell line
HepG2
1
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