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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
976
total RNA-seq
508
ATAC-seq
350
single cell RNA-seq
179
DNase-seq
68
WGBS
56
snATAC-seq
54
pCHi-C
28
Hi-C
16
RRBS
16
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
68
DNA methylation
16
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
27
July, 2019
10
November, 2020
9
August, 2017
7
November, 2018
February, 2021
Available data
41
zippedFastqFolder
33
bam
32
bigWig
16
bed bedMethyl
16
bigBed bedMethyl
16
tsv
11
fastq
Organism
94
Homo sapiens
Biosample type
45
tissue
42
primary cell
7
cell line
Organ
57
pancreas
47
epithelium
9
adipose tissue
9
connective tissue
9
heart
8
liver
4
brain
musculature of body
2
blood vessel
2
spleen
2
vasculature
1
kidney
1
limb
Project
53
AMP
41
HPAP
Genome assembly (visualization)
32
GRCh38
16
hg19
Lab
43
AMP-T2D consortium
41
Klaus Kaestner, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
assay_title!
ChIP-seq
month_released!
February, 2021
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
94 results
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WGBS
small RNA-seq
MeRIP-seq
tissue
body of pancreas
2
2
heart left ventricle
4
islet of Langerhans
4
liver
3
1
adipose tissue
3
+ See 17 more…
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
mesenchymal stem cell of adipose
1
cell line
EndoC_BH1
6
HepG2
1
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