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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1527
total RNA-seq
531
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
5
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
75
DNA methylation
18
Transcription
Target of assay
5
control
nucleotide modification
Date released
41
May, 2022
30
July, 2019
9
August, 2017
7
November, 2018
6
February, 2021
5
November, 2020
Available data
41
zippedFastqFolder
36
bam
35
bigWig
24
tsv
17
bed bedMethyl
17
bigBed bedMethyl
17
fastq
Organism
98
Homo sapiens
Biosample type
49
primary cell
45
tissue
4
cell line
Organ
58
pancreas
50
epithelium
9
adipose tissue
9
connective tissue
9
heart
8
liver
4
brain
3
musculature of body
2
blood vessel
2
spleen
2
vasculature
1
kidney
1
limb
Project
51
AMP
47
HPAP
Genome assembly (visualization)
35
GRCh38
18
hg19
Lab
47
Klaus Kaestner, Upenn
46
AMP-T2D consortium
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
3
inconsistent ontology term
assay_title!
DNAme array
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
98 results
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WGBS
small RNA-seq
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
tissue
body of pancreas
2
2
heart left ventricle
4
liver
3
1
adipose tissue
3
right lobe of liver
1
2
+ See 19 more…
cell line
EndoC_BH1
3
HepG2
1
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