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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1592
ChIP-seq
1280
total RNA-seq
331
ATAC-seq
182
single cell RNA-seq
181
DNase-seq
87
RNA microarray
pCHi-C
28
WGBS
28
snATAC-seq
24
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
28
DNA methylation
16
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
28
July, 2019
10
November, 2020
9
August, 2017
7
November, 2018
Available data
34
bam
33
bigWig
17
bed bedMethyl
17
bigBed bedMethyl
16
tsv
11
fastq
Organism
54
Homo sapiens
Biosample type
primary cell
47
tissue
7
cell line
Organ
16
pancreas
9
heart
8
adipose tissue
8
connective tissue
8
liver
6
epithelium
4
brain
2
blood vessel
2
musculature of body
2
spleen
2
vasculature
1
kidney
1
limb
Project
54
AMP
Genome assembly (visualization)
33
GRCh38
16
hg19
Lab
44
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
assay_title!
pCHi-C
biosample_type!
primary cell
BIOSAMPLE
ASSAY
54 results
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WGBS
small RNA-seq
MeRIP-seq
tissue
body of pancreas
2
2
heart left ventricle
4
islet of Langerhans
4
liver
3
1
adipose tissue
3
+ See 19 more…
cell line
EndoC_BH1
6
HepG2
1
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