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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1501
total RNA-seq
454
ATAC-seq
335
single cell RNA-seq
212
DNase-seq
87
RNA microarray
62
snATAC-seq
pCHi-C
34
Hi-C
34
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
34
DNA methylation
18
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
May, 2022
30
July, 2019
10
November, 2020
9
August, 2017
7
November, 2018
6
February, 2021
Available data
36
bam
35
bigWig
24
tsv
17
bed bedMethyl
17
bigBed bedMethyl
17
fastq
Organism
62
Homo sapiens
Biosample type
47
tissue
8
primary cell
7
cell line
Organ
22
pancreas
12
epithelium
9
adipose tissue
9
connective tissue
9
heart
8
liver
4
brain
3
musculature of body
2
blood vessel
2
spleen
2
vasculature
1
kidney
1
limb
Project
56
AMP
6
HPAP
Genome assembly (visualization)
35
GRCh38
18
hg19
Lab
46
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
6
Klaus Kaestner, Upenn
Audit category:
6
inconsistent ontology term
assay_title!
pCHi-C
month_released!
May, 2022
BIOSAMPLE
ASSAY
62 results
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WGBS
small RNA-seq
MeRIP-seq
tissue
body of pancreas
2
2
heart left ventricle
4
islet of Langerhans
4
liver
3
1
adipose tissue
3
+ See 19 more…
primary cell
pancreatic alpha cell
6
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
cell line
EndoC_BH1
6
HepG2
1
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