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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1798
ChIP-seq
1129
total RNA-seq
525
ATAC-seq
369
single cell RNA-seq
210
DNase-seq
86
RNA microarray
84
snATAC-seq
69
WGBS
pCHi-C
34
Hi-C
21
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
69
DNA methylation
15
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
27
July, 2019
10
November, 2020
7
November, 2018
6
February, 2021
3
August, 2017
Available data
41
zippedFastqFolder
31
bam
30
bigWig
21
tsv
15
bed bedMethyl
15
bigBed bedMethyl
14
fastq
Organism
94
Homo sapiens
Biosample type
48
primary cell
39
tissue
7
cell line
Organ
63
pancreas
53
epithelium
adipose tissue
9
connective tissue
9
heart
8
liver
4
brain
3
musculature of body
2
blood vessel
2
spleen
2
vasculature
1
kidney
1
limb
Project
47
AMP
47
HPAP
Genome assembly (visualization)
30
GRCh38
15
hg19
Lab
47
Klaus Kaestner, Upenn
37
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
assay_title!
pCHi-C
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
94 results
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WGBS
small RNA-seq
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
skeletal muscle satellite cell
1
tissue
body of pancreas
2
2
heart left ventricle
4
islet of Langerhans
4
liver
3
1
right lobe of liver
1
2
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cell line
EndoC_BH1
6
HepG2
1
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