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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1742
ChIP-seq
1396
total RNA-seq
428
ATAC-seq
299
single cell RNA-seq
193
DNase-seq
86
RNA microarray
84
snATAC-seq
57
pCHi-C
28
WGBS
26
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
28
DNA methylation
18
Transcription
Target of assay
2
control
2
nucleotide modification
Date released
30
July, 2019
9
August, 2017
7
November, 2018
4
November, 2020
Available data
36
bam
35
bigWig
18
tsv
17
bed bedMethyl
17
bigBed bedMethyl
11
fastq
Organism
50
Homo sapiens
Biosample type
47
tissue
2
primary cell
1
cell line
Organ
63
pancreas
epithelium
9
adipose tissue
9
connective tissue
9
heart
8
liver
4
brain
3
musculature of body
2
blood vessel
2
spleen
2
vasculature
1
kidney
1
limb
Project
50
AMP
Genome assembly (visualization)
35
GRCh38
18
hg19
Lab
46
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
assay_title!
siRNA RNA-seq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
50 results
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WGBS
small RNA-seq
MeRIP-seq
tissue
body of pancreas
2
2
heart left ventricle
4
islet of Langerhans
4
liver
3
1
adipose tissue
3
+ See 19 more…
primary cell
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
cell line
HepG2
1
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