Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1468
total RNA-seq
528
ATAC-seq
356
single cell RNA-seq
212
DNase-seq
83
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
83
DNA accessibility
75
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
62
May, 2022
33
February, 2021
16
January, 2021
12
July, 2019
10
April, 2020
10
November, 2020
9
August, 2017
7
November, 2018
6
August, 2021
2
February, 2023
1
August, 2022
Available data
62
zippedFastqFolder
44
fastq
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
6
tsv
1
bed bed3+
txt
Organism
167
Homo sapiens
Biosample type
103
primary cell
58
tissue
7
cell line
Organ
72
pancreas
53
epithelium
10
lung
8
blood
8
bodily fluid
8
heart
6
adipose tissue
6
connective tissue
6
kidney
5
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
95
HPAP
45
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
17
GRCh38
Lab
95
Klaus Kaestner, Upenn
29
AMP-T2D consortium
18
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
28
audit script error
6
inconsistent ontology term
assay_title!
STARR-seq
files.file_type!
txt
BIOSAMPLE
ASSAY
168 results
search-icon
table-tab-icon
Clear Filters
snATAC-seq
WGBS
MeRIP-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
31
pancreatic beta cell
16
peripheral blood mononuclear cell
8
tissue
islet of Langerhans
7
4
lung
10
kidney
6
pancreas
4
2
heart left ventricle
4
+ See 11 more…
cell line
EndoC_BH1
6
HepG2
1
See all biosamples
Download