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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1483
total RNA-seq
525
ATAC-seq
366
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
63
WGBS
57
pCHi-C
26
Hi-C
10
MeRIP-seq
6
RRBS
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
84
DNA accessibility
63
DNA methylation
1
DNA sequencing
Target of assay
5
control
5
nucleotide modification
Date released
63
May, 2022
33
February, 2021
16
January, 2021
July, 2019
10
April, 2020
10
November, 2020
9
August, 2017
7
August, 2021
7
November, 2018
2
February, 2023
1
August, 2022
Available data
62
zippedFastqFolder
44
fastq
9
bam
9
bed bedMethyl
9
bigBed bedMethyl
9
bigWig
6
tsv
1
bed bed3+
1
txt
1
vcf
Organism
157
Homo sapiens
Biosample type
103
primary cell
47
tissue
8
cell line
Organ
72
pancreas
53
epithelium
10
lung
8
blood
8
bodily fluid
6
adipose tissue
6
connective tissue
6
kidney
5
liver
2
spleen
1
musculature of body
Project
95
HPAP
35
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
9
GRCh38
1
hg19
Lab
95
Klaus Kaestner, Upenn
18
AMP-T2D consortium
18
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
1
Bing Ren, UCSD
Audit category:
29
audit script error
6
inconsistent ontology term
month_released!
July, 2019
BIOSAMPLE
ASSAY
158 results
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snATAC-seq
WGBS
MeRIP-seq
whole genome sequencing assay
primary cell
Langerhans cell
48
pancreatic alpha cell
31
pancreatic beta cell
16
peripheral blood mononuclear cell
8
tissue
islet of Langerhans
7
4
lung
10
kidney
6
pancreas
4
2
adipose tissue
3
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cell line
EndoC_BH1
6
HepG2
1
1
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