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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1387
ChIP-seq
1355
total RNA-seq
499
ATAC-seq
356
single cell RNA-seq
210
DNase-seq
83
snATAC-seq
74
WGBS
51
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
Assay category
83
DNA accessibility
74
DNA methylation
Target of assay
2
control
2
nucleotide modification
Date released
62
May, 2022
33
February, 2021
16
January, 2021
12
July, 2019
10
April, 2020
9
August, 2017
6
August, 2021
6
November, 2018
4
November, 2020
2
February, 2023
1
August, 2022
Available data
62
zippedFastqFolder
43
fastq
17
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
6
tsv
1
bed bed3+
txt
Organism
160
Homo sapiens
Biosample type
103
primary cell
58
tissue
cell line
Organ
66
pancreas
47
epithelium
10
lung
8
blood
8
bodily fluid
8
heart
6
adipose tissue
6
connective tissue
6
kidney
4
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
95
HPAP
38
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
16
GRCh38
Lab
95
Klaus Kaestner, Upenn
28
AMP-T2D consortium
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
audit script error
biosample_type!
cell line
files.file_type!
txt
BIOSAMPLE
ASSAY
161 results
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snATAC-seq
WGBS
MeRIP-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
31
pancreatic beta cell
16
peripheral blood mononuclear cell
8
tissue
islet of Langerhans
7
4
lung
10
kidney
6
pancreas
4
2
heart left ventricle
4
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