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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
477
ChIP-seq
383
total RNA-seq
242
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
47
WGBS
32
DNase-seq
22
pCHi-C
14
Hi-C
10
RRBS
4
GRO-seq
2
Capture-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
0
MeRIP-seq
Assay category
383
Transcription
47
DNA methylation
Date released
139
May, 2021
80
February, 2023
47
May, 2020
41
May, 2022
29
February, 2021
26
September, 2018
16
September, 2020
15
February, 2018
13
July, 2019
7
August, 2021
5
December, 2019
4
November, 2020
4
October, 2019
2
March, 2020
2
October, 2018
Available data
283
tsv
279
bigWig
277
bam
141
fastq
41
zippedFastqFolder
2
bed bed3+
Organism
430
Homo sapiens
Biosample type
1062
tissue
294
primary cell
136
in vitro differentiated cells
120
cell line
Organ
142
epithelium
128
pancreas
19
connective tissue
6
embryo
6
kidney
5
heart
5
liver
2
artery
2
blood vessel
2
vasculature
1
adipose tissue
1
musculature of body
1
pericardium
Project
195
AMP
139
HPAP
96
T1D
Genome assembly (visualization)
279
hg19
277
GRCh38
Lab
188
AMP-T2D consortium
139
Klaus Kaestner, Upenn
103
Kyle Gaulton, UCSD
Audit category:
93
inconsistent ontology term
BIOSAMPLE
ASSAY
430 results
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Clear Filters
total RNA-seq
WGBS
primary cell
pancreatic alpha cell
52
31
monocyte
54
exocrine cell
39
pancreatic beta cell
21
16
hepatocyte
5
+ See 45 more…
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
induced pluripotent stem cell
9
embryonic stem cell
7
neural progenitor cell
7
+ See 21 more…
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