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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
218
ChIP-seq
152
ATAC-seq
80
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
80
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
39
April, 2018
37
July, 2018
10
November, 2020
3
August, 2018
1
June, 2018
1
March, 2020
Available data
81
tsv
80
bam
80
bigWig
75
fastq
Organism
91
Homo sapiens
Biosample type
74
primary cell
11
tissue
6
cell line
Organ
96
heart
91
pancreas
76
epithelium
66
kidney
10
lung
9
connective tissue
7
blood vessel
7
vasculature
5
brain
4
eye
4
liver
2
adipose tissue
2
artery
2
intestine
2
musculature of body
2
thymus
1
adrenal gland
1
bone element
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
91
AMP
Genome assembly (visualization)
80
GRCh38
80
hg19
Lab
81
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
11
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
91 results
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single cell RNA-seq
MeRIP-seq
pCHi-C
primary cell
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
pancreatic ductal cell
10
+ See 4 more…
tissue
islet of Langerhans
6
4
pancreas
1
cell line
EndoC_BH1
6
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