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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
579
ChIP-seq
296
ATAC-seq
262
single cell RNA-seq
248
total RNA-seq
87
RNA microarray
83
snATAC-seq
58
WGBS
56
pCHi-C
26
Hi-C
16
RRBS
10
MeRIP-seq
5
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
262
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
106
August, 2021
47
September, 2023
40
September, 2020
33
May, 2022
18
February, 2021
10
November, 2020
9
April, 2020
3
December, 2019
3
May, 2023
1
February, 2023
1
November, 2018
1
September, 2018
Available data
105
tsv
52
zippedFastqFolder
36
fastq
13
txt
8
csv
Organism
272
Homo sapiens
Biosample type
177
tissue
87
primary cell
6
cell line
2
in vitro differentiated cells
Organ
93
heart
64
kidney
10
pancreas
9
lung
6
blood vessel
6
epithelium
6
vasculature
2
artery
1
liver
musculature of body
Project
131
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
GRCh38
106
hg19
Lab
110
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
Audit category:
8
inconsistent ontology term
7
audit script error
assay_title!
CRISPR genome editing followed by sgRNA sequencing
assembly!
GRCh38
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
272 results
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single cell RNA-seq
MeRIP-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
primary cell
Langerhans cell
85
pancreatic cell
2
cell line
EndoC_BH1
6
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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