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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1698
ChIP-seq
1450
total RNA-seq
483
ATAC-seq
275
single cell RNA-seq
149
DNase-seq
87
RNA microarray
83
snATAC-seq
66
WGBS
53
pCHi-C
25
Hi-C
15
small RNA-seq
14
RRBS
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
275
Transcription
Target of assay
8
control
5
nucleotide modification
Date released
49
April, 2018
48
July, 2018
47
September, 2023
40
September, 2020
33
May, 2022
18
February, 2021
14
August, 2021
10
November, 2020
9
April, 2020
3
August, 2018
3
December, 2019
3
July, 2019
3
June, 2018
3
May, 2023
1
November, 2018
1
September, 2018
Available data
134
fastq
119
tsv
106
bam
106
bigWig
52
zippedFastqFolder
13
txt
8
csv
Organism
285
Homo sapiens
Biosample type
187
primary cell
90
tissue
6
cell line
2
in vitro differentiated cells
Organ
heart
90
pancreas
76
epithelium
64
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
musculature of body
Project
144
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
106
GRCh38
106
hg19
Lab
123
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
Audit category:
15
inconsistent ontology term
7
audit script error
assay_title!
HiChIP
organ_slims!
heart
musculature of body
BIOSAMPLE
ASSAY
285 results
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Clear Filters
single cell RNA-seq
MeRIP-seq
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 14 more…
tissue
kidney
64
islet of Langerhans
6
4
lung
9
aorta
4
pulmonary artery
2
+ See 1 more…
cell line
EndoC_BH1
6
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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