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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
981
total RNA-seq
880
ChIP-seq
185
ATAC-seq
116
single cell RNA-seq
110
DNase-seq
85
RNA microarray
27
WGBS
25
pCHi-C
22
snATAC-seq
15
Hi-C
15
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
Assay category
1097
Transcription
Target of assay
2
control
2
nucleotide modification
Date released
445
February, 2021
143
May, 2020
120
July, 2018
99
August, 2021
89
August, 2017
39
May, 2021
30
July, 2019
27
May, 2022
25
February, 2020
22
October, 2019
19
November, 2019
14
February, 2023
9
April, 2020
9
March, 2020
6
April, 2018
4
November, 2020
1
May, 2023
Available data
1028
tsv
906
bam
900
bigWig
103
fastq
10
txt
1
csv
Organism
1101
Homo sapiens
Biosample type
1101
tissue
428
primary cell
138
in vitro differentiated cells
115
cell line
Organ
455
connective tissue
397
adipose tissue
293
pancreas
171
liver
kidney
108
heart
62
bone element
19
eye
17
brain
13
blood vessel
13
vasculature
9
lung
7
limb
6
musculature of body
5
nerve
4
artery
4
skeleton
2
epithelium
1
spinal cord
Project
1085
AMP
9
LungMap
7
T1D
Genome assembly (visualization)
901
GRCh38
901
hg19
Lab
1055
AMP-T2D consortium
20
Karen Mohlke, UNC
12
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
organ_slims!
kidney
BIOSAMPLE
ASSAY
1101 results
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total RNA-seq
single cell RNA-seq
MeRIP-seq
tissue
adipose tissue
382
islet of Langerhans
292
6
4
liver
167
1
bone tissue
58
heart left ventricle
3
18
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