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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1522
total RNA-seq
531
ATAC-seq
319
single cell RNA-seq
212
DNase-seq
85
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
319
Transcription
1
DNA sequencing
Target of assay
8
control
5
nucleotide modification
Date released
107
August, 2021
49
April, 2018
48
July, 2018
40
September, 2020
34
May, 2022
18
February, 2021
10
November, 2020
9
April, 2020
3
August, 2018
December, 2019
3
July, 2019
3
June, 2018
3
May, 2023
1
February, 2023
1
November, 2018
1
September, 2018
Available data
209
tsv
134
fastq
106
bam
106
bigWig
52
zippedFastqFolder
13
txt
8
csv
1
vcf
Organism
330
Homo sapiens
Biosample type
187
primary cell
136
tissue
7
cell line
Organ
93
heart
90
pancreas
76
epithelium
16
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
2
liver
1
musculature of body
Project
236
AMP
85
HPAP
9
LungMap
Genome assembly (visualization)
106
GRCh38
106
hg19
Lab
214
AMP-T2D consortium
85
Klaus Kaestner, Upenn
KPMP
11
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
1
Bing Ren, UCSD
Audit category:
13
inconsistent ontology term
5
audit script error
lab.title!
KPMP
month_released!
December, 2019
BIOSAMPLE
ASSAY
330 results
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single cell RNA-seq
MeRIP-seq
whole genome sequencing assay
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 14 more…
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
kidney
16
+ See 14 more…
cell line
EndoC_BH1
6
HepG2
1
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