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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
485
ChIP-seq
133
ATAC-seq
110
single cell RNA-seq
87
RNA microarray
60
total RNA-seq
36
pCHi-C
28
WGBS
26
DNase-seq
5
GRO-seq
5
Hi-C
3
snDrop-seq
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
snATAC-seq
0
MeRIP-seq
Assay category
110
Transcription
Date released
98
August, 2021
6
February, 2021
3
December, 2019
1
February, 2023
1
May, 2022
1
November, 2018
September, 2018
Available data
105
tsv
7
csv
5
txt
1
fastq
Organism
110
Homo sapiens
Biosample type
107
tissue
2
in vitro differentiated cells
1
primary cell
Organ
93
heart
6
blood vessel
6
kidney
6
vasculature
2
artery
1
liver
1
musculature of body
Project
110
AMP
Genome assembly (visualization)
106
GRCh38
hg19
Lab
110
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
Audit category:
7
audit script error
2
inconsistent ontology term
assembly!
hg19
month_released!
September, 2018
BIOSAMPLE
ASSAY
110 results
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single cell RNA-seq
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
kidney
6
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in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
primary cell
pancreatic cell
1
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