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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1382
ChIP-seq
1279
total RNA-seq
368
ATAC-seq
287
single cell RNA-seq
120
DNase-seq
78
snATAC-seq
73
WGBS
47
pCHi-C
23
Hi-C
17
small RNA-seq
16
RRBS
5
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
2
Capture-C
2
HiChIP
2
MeRIP-seq
2
STARR-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
RNA microarray
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
287
Transcription
Target of assay
control
2
nucleotide modification
Date released
92
August, 2021
49
April, 2018
42
July, 2018
40
September, 2020
34
May, 2022
13
February, 2021
9
April, 2020
3
August, 2018
2
June, 2018
2
November, 2020
1
February, 2023
1
November, 2018
1
September, 2018
Available data
188
tsv
127
fastq
96
bam
96
bigWig
52
zippedFastqFolder
3
csv
Organism
289
Homo sapiens
Biosample type
177
primary cell
112
tissue
Organ
93
heart
77
pancreas
69
epithelium
kidney
9
lung
blood vessel
6
vasculature
4
connective tissue
2
artery
1
liver
1
musculature of body
Project
195
AMP
85
HPAP
9
LungMap
Genome assembly (visualization)
96
GRCh38
96
hg19
Lab
193
AMP-T2D consortium
85
Klaus Kaestner, Upenn
9
Xin Sun, UCSD
2
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
inconsistent ontology term
2
audit script error
audit.ERROR.category!
inconsistent ontology term
organ_slims!
blood vessel
kidney
target.investigated_as!
control
BIOSAMPLE
ASSAY
289 results
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single cell RNA-seq
MeRIP-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic acinar cell
11
pancreatic delta cell
11
+ See 9 more…
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
lung
9
+ See 11 more…
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