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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
281
ATAC-seq
261
ChIP-seq
252
single cell RNA-seq
196
total RNA-seq
87
RNA microarray
78
snATAC-seq
57
WGBS
56
pCHi-C
33
Hi-C
21
RRBS
5
GRO-seq
5
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
252
Transcription
Target of assay
control
5
nucleotide modification
Date released
98
August, 2021
47
September, 2023
40
September, 2020
34
May, 2022
18
February, 2021
9
April, 2020
5
November, 2020
3
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
208
tsv
134
fastq
bam
103
bigWig
52
zippedFastqFolder
8
csv
5
txt
Organism
257
Homo sapiens
Biosample type
165
tissue
87
primary cell
3
cell line
2
in vitro differentiated cells
Organ
93
heart
53
kidney
9
lung
6
blood vessel
6
vasculature
5
pancreas
3
epithelium
2
artery
1
liver
1
musculature of body
Project
116
AMP
85
HPAP
47
KPMP
9
LungMap
Lab
111
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
Katalin Susztak, Upenn
9
Xin Sun, UCSD
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
7
audit script error
5
inconsistent ontology term
files.file_type!
bam
lab.title!
Katalin Susztak, Upenn
target.investigated_as!
control
BIOSAMPLE
ASSAY
257 results
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single cell RNA-seq
MeRIP-seq
tissue
kidney
53
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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primary cell
Langerhans cell
85
pancreatic cell
2
cell line
EndoC_BH1
3
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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