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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
566
ChIP-seq
221
ATAC-seq
177
single cell RNA-seq
130
total RNA-seq
87
RNA microarray
53
pCHi-C
35
snATAC-seq
28
WGBS
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
35
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
16
January, 2021
10
April, 2020
10
November, 2020
6
August, 2021
2
February, 2023
1
August, 2022
Organism
44
Homo sapiens
Biosample type
31
tissue
8
primary cell
6
cell line
Organ
21
pancreas
10
lung
8
blood
8
bodily fluid
6
epithelium
6
kidney
Project
HPAP
18
T1D
17
AMP
10
LungMap
Lab
18
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
1
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
assembly!
hg19
award.project!
HPAP
month_released!
May, 2022
BIOSAMPLE
ASSAY
45 results
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snATAC-seq
MeRIP-seq
tissue
islet of Langerhans
7
4
lung
10
kidney
6
pancreas
4
primary cell
peripheral blood mononuclear cell
8
cell line
EndoC_BH1
6