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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1288
total RNA-seq
1011
ChIP-seq
466
ATAC-seq
226
single cell RNA-seq
87
RNA microarray
58
WGBS
54
pCHi-C
46
snATAC-seq
28
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
DNase-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
46
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
21
May, 2022
16
January, 2021
10
November, 2020
6
August, 2021
2
February, 2023
1
August, 2022
Available data
fastq
21
zippedFastqFolder
bed bed3+
1
txt
Organism
56
Homo sapiens
Biosample type
29
primary cell
21
tissue
6
cell line
Organ
21
pancreas
8
blood
8
bodily fluid
6
epithelium
6
kidney
Project
21
HPAP
18
T1D
17
AMP
LungMap
Lab
21
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
6
Katalin Susztak, Upenn
1
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
award.project!
LungMap
files.file_type!
bed bed3+
fastq
BIOSAMPLE
ASSAY
56 results
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snATAC-seq
MeRIP-seq
primary cell
Langerhans cell
21
peripheral blood mononuclear cell
8
tissue
islet of Langerhans
7
4
kidney
6
pancreas
4
cell line
EndoC_BH1
6
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