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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1270
total RNA-seq
1014
ChIP-seq
411
ATAC-seq
200
DNase-seq
192
single cell RNA-seq
87
RNA microarray
56
pCHi-C
33
Hi-C
25
snATAC-seq
18
small RNA-seq
17
RRBS
17
WGBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
25
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
May, 2022
16
January, 2021
10
November, 2020
6
August, 2021
2
February, 2023
1
August, 2022
Available data
fastq
Organism
35
Homo sapiens
Biosample type
21
tissue
8
primary cell
6
cell line
Organ
21
pancreas
8
blood
8
bodily fluid
6
epithelium
6
kidney
Project
18
T1D
17
AMP
LungMap
Lab
18
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
6
Katalin Susztak, Upenn
1
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
award.project!
LungMap
files.file_type!
fastq
month_released!
May, 2022
BIOSAMPLE
ASSAY
35 results
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Clear Filters
snATAC-seq
MeRIP-seq
tissue
islet of Langerhans
7
4
kidney
6
pancreas
4
primary cell
peripheral blood mononuclear cell
8
cell line
EndoC_BH1
6
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