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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1653
ChIP-seq
1510
total RNA-seq
527
ATAC-seq
366
single cell RNA-seq
180
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
55
pCHi-C
31
Hi-C
19
RRBS
14
small RNA-seq
10
MeRIP-seq
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1
DNA sequencing
Target of assay
5
control
5
nucleotide modification
Date released
10
November, 2020
1
August, 2021
Available data
1
vcf
Organism
11
Homo sapiens
Biosample type
7
cell line
4
tissue
Organ
10
pancreas
6
epithelium
1
liver
Project
11
AMP
Lab
10
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
assay_title!
CRISPRi RNA-seq
GRO-seq
organ_slims!
brain
BIOSAMPLE
ASSAY
11 results
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Clear Filters
MeRIP-seq
whole genome sequencing assay
cell line
EndoC_BH1
6
HepG2
1
tissue
islet of Langerhans
4
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