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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1241
total RNA-seq
1014
ChIP-seq
395
ATAC-seq
224
single cell RNA-seq
200
DNase-seq
87
RNA microarray
58
WGBS
56
pCHi-C
51
snATAC-seq
32
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
84
February, 2021
2
December, 2019
1
August, 2021
Available data
84
txt
2
tsv
Organism
86
Homo sapiens
Biosample type
87
tissue
Organ
84
bone element
2
kidney
1
adipose tissue
1
connective tissue
1
epithelium
Project
87
AMP
Lab
87
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
2
audit script error
assay_title!
Capture-C
files.file_type!
fastq
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
87 results
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RNA microarray
tissue
bone element
84
kidney interstitium
1
renal glomerulus
1
subcutaneous adipose tissue
1
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