Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
1527
total RNA-seq
529
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
56
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
21
DNA methylation
Date released
84
February, 2021
15
July, 2019
6
August, 2017
2
December, 2019
1
August, 2021
Available data
84
txt
19
bed bedMethyl
19
bigBed bedMethyl
4
fastq
2
tsv
Organism
107
Homo sapiens
Biosample type
98
tissue
10
primary cell
Organ
84
bone element
7
epithelium
6
kidney
5
musculature of body
2
brain
2
connective tissue
2
heart
2
liver
2
pancreas
1
adipose tissue
1
eye
1
pericardium
1
vasculature
Project
108
AMP
Genome assembly (visualization)
19
hg19
Lab
108
AMP-T2D consortium
Audit category:
86
inconsistent ontology term
2
audit script error
assay_title!
ChIP-seq
lab.title!
Mark McCarthy, Oxford
organ_slims!
esophagus
BIOSAMPLE
ASSAY
108 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
RRBS
tissue
bone element
84
skeletal muscle tissue
4
brain
1
heart left ventricle
1
islet of Langerhans
1
+ See 7 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
See all biosamples
Download