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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1863
ChIP-seq
982
total RNA-seq
509
ATAC-seq
351
single cell RNA-seq
212
DNase-seq
69
WGBS
57
snATAC-seq
55
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
90
DNA methylation
Date released
February, 2021
41
May, 2022
27
July, 2019
15
August, 2017
7
November, 2018
2
December, 2019
1
August, 2021
Available data
41
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
18
bam
17
bigWig
15
fastq
2
tsv
Organism
92
Homo sapiens
Biosample type
51
primary cell
41
tissue
1
cell line
Organ
48
epithelium
47
pancreas
10
heart
8
connective tissue
7
adipose tissue
7
liver
6
kidney
6
musculature of body
3
vasculature
2
blood vessel
2
brain
2
spleen
1
eye
1
limb
1
pericardium
Project
52
AMP
41
HPAP
Genome assembly (visualization)
19
hg19
17
GRCh38
Lab
52
AMP-T2D consortium
41
Klaus Kaestner, Upenn
Audit category:
2
audit script error
2
inconsistent ontology term
month_released!
February, 2021
BIOSAMPLE
ASSAY
93 results
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WGBS
RRBS
RNA microarray
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 7 more…
tissue
heart left ventricle
4
1
liver
3
1
skeletal muscle tissue
4
adipose tissue
3
pancreas
2
1
+ See 16 more…
cell line
HepG2
1
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