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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1290
total RNA-seq
1014
ChIP-seq
470
ATAC-seq
226
single cell RNA-seq
200
DNase-seq
87
RNA microarray
58
WGBS
56
pCHi-C
47
snATAC-seq
33
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
47
DNA accessibility
17
DNA methylation
Date released
84
February, 2021
22
May, 2022
16
January, 2021
15
July, 2019
April, 2020
7
August, 2021
2
August, 2017
2
December, 2019
2
February, 2023
1
August, 2022
Available data
85
txt
fastq
21
zippedFastqFolder
19
bed bedMethyl
19
bigBed bedMethyl
2
tsv
1
bed bed3+
Organism
150
Homo sapiens
Biosample type
113
tissue
38
primary cell
Organ
84
bone element
13
pancreas
12
kidney
8
blood
8
bodily fluid
7
epithelium
4
musculature of body
2
brain
2
connective tissue
2
heart
1
adipose tissue
1
eye
1
liver
1
pericardium
1
vasculature
Project
112
AMP
21
HPAP
18
T1D
Genome assembly (visualization)
16
hg19
Lab
106
AMP-T2D consortium
21
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
6
Katalin Susztak, Upenn
Audit category:
86
inconsistent ontology term
4
audit script error
files.file_type!
fastq
month_released!
April, 2020
BIOSAMPLE
ASSAY
151 results
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RNA microarray
snATAC-seq
RRBS
tissue
bone element
84
islet of Langerhans
7
1
kidney
6
1
pancreas
4
1
skeletal muscle tissue
1
2
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primary cell
Langerhans cell
21
peripheral blood mononuclear cell
8
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 6 more…
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