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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1839
ChIP-seq
1501
total RNA-seq
517
ATAC-seq
361
single cell RNA-seq
212
DNase-seq
85
RNA microarray
75
WGBS
57
pCHi-C
55
snATAC-seq
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
21
DNA methylation
Date released
84
February, 2021
15
July, 2019
6
August, 2017
1
August, 2021
Available data
84
txt
19
bed bedMethyl
19
bigBed bedMethyl
4
fastq
Organism
105
Homo sapiens
Biosample type
96
tissue
10
primary cell
Organ
84
bone element
6
epithelium
5
musculature of body
4
kidney
2
brain
2
connective tissue
2
heart
2
liver
2
pancreas
1
adipose tissue
1
eye
1
pericardium
1
vasculature
Project
106
AMP
Genome assembly (visualization)
19
hg19
Lab
106
AMP-T2D consortium
Audit category:
86
inconsistent ontology term
audit script error
audit.ERROR.category!
audit script error
month_released!
August, 2022
September, 2018
BIOSAMPLE
ASSAY
106 results
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RNA microarray
RRBS
tissue
bone element
84
skeletal muscle tissue
4
brain
1
heart left ventricle
1
islet of Langerhans
1
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primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
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