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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1689
ChIP-seq
1527
total RNA-seq
531
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
58
WGBS
57
pCHi-C
34
Hi-C
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
2
DNA methylation
Date released
84
February, 2021
2
August, 2017
2
December, 2019
1
August, 2021
Available data
84
txt
bed bedMethyl
19
bigBed bedMethyl
4
fastq
2
tsv
Organism
88
Homo sapiens
Biosample type
89
tissue
Organ
84
bone element
2
kidney
2
musculature of body
1
adipose tissue
1
connective tissue
1
epithelium
Project
89
AMP
Lab
89
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
2
audit script error
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bed bedMethyl
month_released!
December, 2017
BIOSAMPLE
ASSAY
89 results
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RNA microarray
RRBS
tissue
bone element
84
skeletal muscle tissue
2
kidney interstitium
1
renal glomerulus
1
subcutaneous adipose tissue
1
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