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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
885
ChIP-seq
461
total RNA-seq
249
ATAC-seq
145
single cell RNA-seq
56
snATAC-seq
48
WGBS
28
pCHi-C
27
DNase-seq
17
Hi-C
9
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
small RNA-seq
1
whole genome sequencing assay
0
RNA microarray
Assay category
9
DNA methylation
Date released
8
July, 2019
1
August, 2017
Available data
9
bed bedMethyl
9
bigBed bedMethyl
1
fastq
Organism
9
Homo sapiens
Biosample type
tissue
9
primary cell
Organ
6
epithelium
3
kidney
1
brain
connective tissue
1
eye
1
heart
1
liver
1
musculature of body
1
vasculature
Project
9
AMP
Genome assembly (visualization)
9
hg19
Lab
9
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
biosample_type!
tissue
month_released!
September, 2020
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
9 results
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RRBS
primary cell
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
kidney epithelial cell
1
+ See 4 more…
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