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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1790
ChIP-seq
970
total RNA-seq
503
ATAC-seq
351
single cell RNA-seq
210
DNase-seq
63
WGBS
57
snATAC-seq
53
pCHi-C
34
Hi-C
21
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
RNA microarray
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
21
DNA methylation
Date released
February, 2021
15
July, 2019
6
August, 2017
2
December, 2019
Available data
19
bed bedMethyl
19
bigBed bedMethyl
4
fastq
2
tsv
Organism
23
Homo sapiens
Biosample type
13
tissue
10
primary cell
Organ
7
epithelium
6
kidney
5
musculature of body
2
brain
2
connective tissue
2
heart
2
liver
2
pancreas
adipose tissue
1
eye
1
pericardium
1
vasculature
Project
23
AMP
Genome assembly (visualization)
19
hg19
Lab
23
AMP-T2D consortium
Audit category:
2
audit script error
2
inconsistent ontology term
month_released!
February, 2021
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
23 results
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RRBS
RNA microarray
tissue
skeletal muscle tissue
4
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
+ See 5 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
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