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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
517
ATAC-seq
212
DNase-seq
212
total RNA-seq
158
single cell RNA-seq
85
RNA microarray
84
snATAC-seq
69
WGBS
34
Hi-C
26
pCHi-C
21
RRBS
5
FAIRE-seq
5
GRO-seq
5
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
69
DNA methylation
Date released
84
February, 2021
41
May, 2022
12
July, 2019
9
August, 2017
7
November, 2018
1
August, 2021
Available data
84
txt
41
zippedFastqFolder
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
17
fastq
tsv
Organism
153
Homo sapiens
Biosample type
112
tissue
41
primary cell
1
cell line
Organ
84
bone element
45
pancreas
41
epithelium
8
heart
7
adipose tissue
7
connective tissue
5
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
113
AMP
41
HPAP
Genome assembly (visualization)
17
GRCh38
Lab
113
AMP-T2D consortium
41
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
files.file_type!
tsv
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
154 results
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RNA microarray
WGBS
tissue
bone element
84
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
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primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
cell line
HepG2
1
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