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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1338
total RNA-seq
1316
ChIP-seq
508
ATAC-seq
368
single cell RNA-seq
206
DNase-seq
87
RNA microarray
84
snATAC-seq
70
WGBS
54
pCHi-C
30
Hi-C
19
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
70
DNA methylation
Date released
90
February, 2021
41
May, 2022
11
July, 2019
6
August, 2017
6
November, 2018
2
December, 2019
1
August, 2021
Available data
84
txt
41
zippedFastqFolder
17
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
15
fastq
8
tsv
Organism
156
Homo sapiens
Biosample type
110
tissue
47
primary cell
Organ
84
bone element
51
pancreas
48
epithelium
8
heart
7
adipose tissue
7
connective tissue
liver
2
blood vessel
2
kidney
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
110
AMP
47
HPAP
Genome assembly (visualization)
16
GRCh38
Lab
110
AMP-T2D consortium
47
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
2
audit script error
organ_slims!
liver
target.investigated_as!
other context
BIOSAMPLE
ASSAY
157 results
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RNA microarray
WGBS
tissue
bone element
84
heart left ventricle
4
adipose tissue
3
subcutaneous abdominal adipose tissue
3
aorta
2
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primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
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