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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1397
total RNA-seq
829
ChIP-seq
489
ATAC-seq
360
single cell RNA-seq
208
DNase-seq
84
snATAC-seq
75
WGBS
48
pCHi-C
29
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1
Transcription
Date released
2
December, 2019
1
August, 2021
1
March, 2023
Available data
2
tsv
Organism
2
Homo sapiens
Biosample type
3
tissue
1
cell line
Organ
2
kidney
1
adipose tissue
1
connective tissue
1
epithelium
Project
3
AMP
1
community
Lab
3
AMP-T2D consortium
1
Anna Gloyn, Oxford
Audit category:
inconsistent ontology term
2
audit script error
audit.ERROR.category!
inconsistent ontology term
target.investigated_as!
broad histone mark
histone
BIOSAMPLE
ASSAY
4 results
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RNA microarray
shRNA RNA-seq
tissue
kidney interstitium
1
renal glomerulus
1
subcutaneous adipose tissue
1
cell line
EndoC-BH1
1
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