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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1737
ChIP-seq
1455
total RNA-seq
ATAC-seq
224
single cell RNA-seq
182
DNase-seq
87
RNA microarray
63
snATAC-seq
54
pCHi-C
31
Hi-C
26
WGBS
19
RRBS
17
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
224
Transcription
Target of assay
3
control
Date released
102
February, 2021
49
April, 2018
48
July, 2018
47
September, 2023
21
September, 2020
15
August, 2021
9
April, 2020
5
December, 2019
3
August, 2018
3
July, 2019
3
June, 2018
3
May, 2023
1
May, 2022
1
November, 2018
1
September, 2018
Available data
134
fastq
121
tsv
106
bam
106
bigWig
97
txt
zippedFastqFolder
8
csv
Organism
310
Homo sapiens
Biosample type
174
tissue
135
primary cell
2
in vitro differentiated cells
Organ
heart
84
bone element
80
pancreas
71
epithelium
66
kidney
9
lung
6
blood vessel
6
vasculature
5
connective tissue
3
brain
2
artery
1
adipose tissue
1
liver
1
musculature of body
Project
222
AMP
47
KPMP
33
HPAP
9
LungMap
Genome assembly (visualization)
106
GRCh38
106
hg19
Lab
211
AMP-T2D consortium
47
KPMP
33
Klaus Kaestner, Upenn
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
93
inconsistent ontology term
9
audit script error
assay_title!
ATAC-seq
files.file_type!
zippedFastqFolder
organ_slims!
heart
BIOSAMPLE
ASSAY
311 results
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Clear Filters
single cell RNA-seq
RNA microarray
tissue
bone element
84
kidney
64
lung
9
islet of Langerhans
6
aorta
4
+ See 6 more…
primary cell
Langerhans cell
33
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 14 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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